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Publications

PhD Thesis

  • A. Routier. Multimodal brain imaging for the study of progressive primary aphasia. PhD Thesis, 2018, Sorbonne University, Paris, France

Submitted Papers

  • A. Routier, N. Burgos, J. Guillon, J. Samper-González, J. Wen, S. Bottani , A. Marcoux, M. Bacci, S. Fontanella, T. Jacquemont, A. Wild, P. Gori, A. Guyot, P. Lu, M. Diaz, E. Sutre, T. Moreau, M. Teichmann, M.-O. Habert, S. Durrleman, O. Colliot. Clinica: an open source software platform for reproducible clinical neuroscience studies. Submitted

Journal Articles

  • M. Sundqvist *, A. Routier *, B. Dubois, O. Colliot, M. Teichmann. The white matter module-hub network of semantics revealed by semantic dementia. Journal of Cognitive Neuroscience, 2020
  • J. Wen *, E. Thibeau-Sutre *, J. Samper-Gonzalez, A. Routier, S. Bottani, S. Durrleman, N. Burgos, O. Colliot. Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. Medical Image Analysis, 2020
  • J. Wen, J. Samper-González, S. Bottani, A. Routier, N. Burgos, T. Jacquemont, S. Fontanella, S. Durrleman, S. Epelbaum, A. Bertrand, O. Colliot. Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimer’s disease. Neuroinformatics, 2020
  • J. Wen, H. Zhang, D. Alexander, S. Durrleman, A. Routier, D. Rinaldi, M. Houot, P. Couratier, D. Hannequin, F. Pasquier, J. Zhang, O. Colliot, I. Le Ber, A. Bertrand. Neurite density is reduced in the presymptomatic phase of C9orf72 disease. JNNP, 2019
  • A. Routier, M.-O. Habert, A. Bertrand, A. Kas, M. Sundqvist, J. Mertz, P.-M. David, H. Bertin, S. Belliard, F. Pasquier, K. Bennys, O. Martinaud, F. Fretcharry-Bouyx, O. Moreaud, O. Godefroy, J. Pariente, M. Puel, P. Couratier, C. Boutoleau-Bretonniere, B. Laurent, R. Migliaccio, B. Dubois, O. Colliot, M. Teichmann. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. Frontiers in Neurology, 2018
  • A. Marcoux, N. Burgos, A. Bertrand, M. Teichmann, A. Routier, J. Wen, J. Samper-González, S. Bottani, S. Durrleman, M.-O. Habert, O. Colliot. An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. Frontiers in Neuroinformatics, 2018
  • C. Sanches, A. Routier, O. Colliot, M. Teichmann. The structure of the mental lexicon: what primary progressive aphasias reveal. Neuropsychologia, 2018
  • J. Samper-González, N. Burgos, S. Bottani, S. Fontanella, P. Lu, A. Marcoux, A. Routier, J. Guillon, M. Bacci, J. Wen, A. Bertrand, H. Bertin, M.-O. Habert, S. Durrleman, T. Evgeniou, O. Colliot. Reproducible evaluation of classification methods in Alzheimer's disease: framework and application to MRI and PET data. NeuroImage, 2018
  • I. Koval, J.-B. Schiratti, A. Routier, M. Bacci, O. Colliot, S. Allassonniere, S. Durrleman. Spatiotemporal propagation of the cortical atrophy during the course of Alzheimer’s Disease: Population and individual patterns. Frontiers in Neurology, 2018
  • A. Mendes, A. Bertrand, F. Lamari, O. Colliot, A. Routier, O. Godefroy, F. Etcharry-Bouyx, O. Moreaud, F. Pasquier, P. Couratier, K. Bennys, M. Vercelletto, O. Martinaud, B. Laurent, J. Pariente, M. Puel, S. Epelbaum, S. Belliard, T. Kaaouana, L. Fillon, M. Chupin, B. Dubois, M. Teichmann. Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias. Neurology, 2018
  • A. Bertrand, J. Wen, D. Rinaldi, M. Houot, S. Sayah, A. Camuzat, C. Fournier, S. Fontanella, A. Routier, P. Couratier, F. Pasquier, M.-O. Habert, D. Hannequin, O. Martinaud, P. Caroppo, R. Levy, B. Dubois, A. Brice, S. Durrleman, O. Colliot, I. Le Ber. Early Cognitive, Structural, and Microstructural Changes in Presymptomatic C9orf72 Carriers Younger Than 40 Years. JAMA neurology, 2018
  • P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, A. Routier, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman. Double diffeomorphism: combining morphometry and structural connectivity analysis. IEEE Transactions on Medical Imaging, 2018
  • A. Bône, M. Louis, A. Routier, J. Samper-González, M. Bacci, B. Charlier, O. Colliot, S. Durrleman. Prediction of the progression of subcortical brain structures in Alzheimer’s disease from baseline. MICCAI Workshop on Mathematical Foundations of Computational Anatomy, 2017
  • T. Jacquemont, F. De Vico Fallani, A. Bertrand, S. Epelbaum, A. Routier, B. Dubois, H. Hampel, S. Durrleman, O. Colliot. Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment. Neurobiology of aging, 2017
  • P. Caroppo, M.-O. Habert, S. Durrleman, A. Funkiewiez, V. Perlbarg, V. Hahn, H. Bertin, M. Gaubert, A. Routier D. Hannequin, V. Deramecourt, F. Pasquier, S. Rivaud-Pechoux, M. Vercelletto, G. Edouart, R. Valabregue, P. Lejeune, M. Didic, J.-C. Corvol, H. Benali, S. Lehericy, B. Dubois, O. Colliot, A. Brice, I. Le Ber. Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease? Journal of Alzheimer's Disease, 2015
  • E.E. Bron et al. Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge. NeuroImage, 2015

Peer-reviewed Conference Articles

  • I. Koval, J.-B. Schiratti, A. Routier, M. Bacci, O. Colliot, S. Allassonnière, S. Durrleman. Statistical learning of spatiotemporal patterns from longitudinal manifold-valued networks. MICCAI, 2017
  • C. Cury, M. Lorenzi, D. Cash, N. David, J. Nicholas, A. Routier, J. Rohrer, S. Ourselin, S. Durrleman, M. Modat. Spatio-temporal shape analysis of cross-sectional data for detection of early changes in neurodegenerative disease. International Workshop on Spectral and Shape Analysis in Medical Imaging, 2016
  • J.-B. Schiratti, S. Allassonniere, A. Routier, O. Colliot, S. Durrleman. A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data. IPMI 2015
  • P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, A. Routier, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman. Joint Morphometry of Fiber Tracts and Gray Matter Structures Using Double Diffeomorphisms. IPMI, 2015
  • A. Routier, P. Gori, A.B. Graciano Fouquier, S. Lecomte, O. Colliot, S. Durrleman. Evaluation of morphometric descriptors of deep brain structures for the automatic classification of patients with Alzheimer’s disease. MICCAI Challenge on Computer-Aided Diagnosis of Dementia based on structural MRI data (CADDementia), 2014 Paper Presentation
  • A. Imperiale, A. Routier, S. Durrleman, P. Moireau. Improving efficiency of data assimilation procedure for a biomechanical heart model by representing surfaces as currents. International Conference on Functional Imaging and Modeling of the Heart, 2013

Abstracts

  • A. Routier, A. Marcoux, M. Diaz Melo, J. Guillon, J. Samper-Gonzàlez, J. Wen, S. Bottani, A. Guyot, E. Thibeau-Sutre, M. Teichmann, M.-O. Habert, S. Durrleman, N. Burgos, O. Colliot. New advances in the Clinica software platform for clinical neuroimaging studies. OHBM, 2019
  • A. Routier, M.-O. Habert, A. Bertrand, A. Kas, P.-M. David, H. Bertin, O. Godefroy, F. Etcharry-Bouyx, O. Moreaud, F. Pasquier, P. Couratier, K. Bennys, C. Boutoleau Bretoniere, O. Martinaud, B. Laurent, J. Pariente, M. Puel, S. Belliard, R. Migliaccio, B. Dubois, O. Colliot, M. Teichmann. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. OHBM, 2018
  • A. Routier, J. Guillon, N. Burgos, J. Samper-González, J. Wen, S. Fontanella, S. Bottani, T. Jacquemont, A. Marcoux, P. Gori, P. Lu, T. Moreau, M. Bacci, S. Durrleman, O. Colliot. Clinica: an open source software platform for reproducible clinical neuroscience studies. OHBM, 2018
  • A. Routier, M. Prastawa, B. Charlier, C. Doucet, J. Glaunès, S. Durrleman. Deformetrica: a software for statistical analysis of anatomical shapes. OHBM, 2015